Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUAD rs12221878 chr11:62626031 C/G 2.93E-5 504 21.75 22.47 7.7 KM Plot
LUAD rs12364519 chr11:62548282 G/A 1.75E-5 498 21.73 21.77 7.7 KM Plot
LUAD rs12413734 chr10:132126118 A/G 9.2E-8 505 3.97 22.32 21.77 KM Plot
LUAD rs12539480 chr7:98922222 A/G 2.46E-10 502 21 25.9 9.32 KM Plot
LUAD rs12570599 chr10:132095568 C/T 0 500 21.87 20.97 2.95 KM Plot
LUAD rs12571839 chr10:132092401 G/A 0 503 21.9 21.55 2.95 KM Plot
LUAD rs12617440 chr2:10922027 C/T 2.96E-8 493 20.68 33.17 2.7 KM Plot
LUAD rs12622210 chr2:218014899 C/G 5.0E-8 503 21.92 20.57 8.8 KM Plot
LUAD rs12669515 chr7:158883817 C/T 2.84E-5 504 23.02 17.9 7 KM Plot
LUAD rs12706536 chr7:123158554 T/C 4.68E-6 501 21.87 22.62 13.08 KM Plot
LUAD rs12751589 chr1:109397797 C/A 0 498 21.9 21.72 2.57 KM Plot
LUAD rs139506738 chr16:71550454 GA/G 2.57E-5 493 22.22 22.4 14.5 KM Plot
LUAD rs139926838 chr7:158840851 TCTAATCAA/T 1.2E-9 484 22.97 19.73 4.95 KM Plot
LUAD rs140270240 chr2:10934640 C/G 2.66E-5 505 20.85 31.52 4.13 KM Plot
LUAD rs140302625 chr17:47379867 G/T 5.65E-11 502 21.93 20.3 4.55 KM Plot